Sample overview

Project Name TCGA-READ
GSE ID GSE222300
GSM ID GSM6919588
Cell Line None
Tissue type rectal cancer
Disease Type rectal cancer
PMID 37146911
Initial gene number 27984
Initial cell number 2845
Post-QC gene number 3416
Post-QC cell number 789

QC Metrics

Bulk-to-ScRNA-seq Label Transfer

Bulk phenotype-associated subpopulations

Reference-Based Annotation

Differentially expressed genes

Overall Survival : Cluster vs

Overall Survival : Cluster vs ( + )

Clinical Stage : Cluster vs

Tumor Size : Cluster vs

Lymph Node Involvement : Cluster vs

Distant Metastasis : Cluster vs

Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )

Cell Population Signaling and Communication

Ligand-Receptor-Mediated Cell-Cell Interactions