Sample overview

Project Name TCGA-READ
GSE ID GSE221575
GSM ID GSM6886537
Cell Line None
Tissue type colorectal cancer
Disease Type IIA
PMID 38253219
Initial gene number 36029
Initial cell number 3000
Post-QC gene number 3942
Post-QC cell number 272

QC Metrics

Bulk-to-ScRNA-seq Label Transfer

Bulk phenotype-associated subpopulations

Reference-Based Annotation

Differentially expressed genes

Overall Survival : Cluster vs

Overall Survival : Cluster vs ( + )

Clinical Stage : Cluster vs

Tumor Size : Cluster vs

Lymph Node Involvement : Cluster vs

Distant Metastasis : Cluster vs

Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )

Cell Population Signaling and Communication

Ligand-Receptor-Mediated Cell-Cell Interactions