Sample overview

Project Name TCGA-READ
GSE ID GSE200253
GSM ID GSM6025579
Cell Line None
Tissue type Invasive margin tissue
Disease Type Invasive margin tissue
PMID 36652202
Initial gene number 33538
Initial cell number 1350
Post-QC gene number 1581
Post-QC cell number 108

QC Metrics

Bulk-to-ScRNA-seq Label Transfer

Bulk phenotype-associated subpopulations

Reference-Based Annotation

Differentially expressed genes

Overall Survival : Cluster vs

Overall Survival : Cluster vs ( + )

Clinical Stage : Cluster vs

Tumor Size : Cluster vs

Lymph Node Involvement : Cluster vs

Distant Metastasis : Cluster vs

Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )

Cell Population Signaling and Communication

Ligand-Receptor-Mediated Cell-Cell Interactions