Sample overview

Project Name TCGA-READ
GSE ID GSE199726
GSM ID GSM5983203
Cell Line None
Tissue type metastasis: liver metastasis
Disease Type Colorectal cancer with liver metastasis
PMID 36805487
Initial gene number 33694
Initial cell number 12629
Post-QC gene number 11209
Post-QC cell number 6301

QC Metrics

Bulk-to-ScRNA-seq Label Transfer

Bulk phenotype-associated subpopulations

Reference-Based Annotation

Differentially expressed genes

Overall Survival : Cluster vs

Overall Survival : Cluster vs ( + )

Clinical Stage : Cluster vs

Tumor Size : Cluster vs

Lymph Node Involvement : Cluster vs

Distant Metastasis : Cluster vs

Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )

Cell Population Signaling and Communication

Ligand-Receptor-Mediated Cell-Cell Interactions