Sample overview

Project Name TCGA-READ
GSE ID GSE199726
GSM ID GSM5983198
Cell Line None
Tissue type metastasis: lymphatic metastasis
Disease Type Colorectal cancer with lymph node metastasis
PMID 36805487
Initial gene number 33694
Initial cell number 9547
Post-QC gene number 10454
Post-QC cell number 770

QC Metrics

Bulk-to-ScRNA-seq Label Transfer

Bulk phenotype-associated subpopulations

Reference-Based Annotation

Differentially expressed genes

Overall Survival : Cluster vs

Overall Survival : Cluster vs ( + )

Clinical Stage : Cluster vs

Tumor Size : Cluster vs

Lymph Node Involvement : Cluster vs

Distant Metastasis : Cluster vs

Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )

Cell Population Signaling and Communication

Ligand-Receptor-Mediated Cell-Cell Interactions