Sample overview
| Project Name |
TCGA-HNSC
|
| GSE ID |
GSE139324
|
| GSM ID |
GSM4138147
|
| Cell Line |
None
|
| Tissue type |
tumor tissue
|
| Disease Type |
Head and neck squamous cell carcinoma
|
| PMID |
31924475
|
| Initial gene number |
33694
|
| Initial cell number |
1168
|
| Post-QC gene number |
1165
|
| Post-QC cell number |
1103
|
Bulk-to-ScRNA-seq Label Transfer
Bulk phenotype-associated subpopulations
Reference-Based Annotation
Differentially expressed genes
Overall Survival : Cluster
vs
There are no results of the analysis here
Overall Survival : Cluster
vs ( + )
There are no results of the analysis here
Clinical Stage : Cluster
vs
There
are no results of the analysis here
Tumor Size : Cluster
vs
There
are no results of the analysis here
Lymph Node Involvement : Cluster
vs
There
are no results of the analysis here
Distant Metastasis : Cluster
vs
There
are no results of the analysis here
Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )
Cell Population Signaling and Communication
Ligand-Receptor-Mediated Cell-Cell Interactions
| Sending Cell Type |
Ligand |
Receiving Cell Type |
Receptor |
Score |
P-value |
Pathway Name |
Function |
Evidence |
| CD8+,T-cells(Nos)_source |
CD99_ligand |
CD4+,T-cells(Nos)_target |
CD99_receptor |
1.366e-02 |
0.0 |
CD99 |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD4+,T-cells(Nos)_source |
CD99_ligand |
CD8+,T-cells(Nos)_target |
CD99_receptor |
1.366e-02 |
0.0 |
CD99 |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD8+,T-cells(Nos)_source |
CD99_ligand |
CD8+,T-cells(Nos)_target |
CD99_receptor |
4.604e-02 |
0.0 |
CD99 |
Cell-Cell Contact |
KEGG: hsa04514 |
| Monocytes(Nos)_source |
CD99_ligand |
CD8+,T-cells(Nos)_target |
CD99_receptor |
1.910e-03 |
0.0 |
CD99 |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD8+,T-cells(Nos)_source |
CD99_ligand |
Monocytes(Nos)_target |
CD99_receptor |
1.910e-03 |
0.0 |
CD99 |
Cell-Cell Contact |
KEGG: hsa04514 |
| B-cells(Nos)_source |
HLA-A_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.159e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD4+,T-cells(Nos)_source |
HLA-A_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.418e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD8+,T-cells(Nos)_source |
HLA-A_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
3.565e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Macrophages(Nos)_source |
HLA-A_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.661e-03 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Monocytes(Nos)_source |
HLA-A_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.668e-03 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| B-cells(Nos)_source |
HLA-B_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.322e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD4+,T-cells(Nos)_source |
HLA-B_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.418e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD8+,T-cells(Nos)_source |
HLA-B_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
3.549e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Macrophages(Nos)_source |
HLA-B_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.758e-03 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Monocytes(Nos)_source |
HLA-B_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.864e-03 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| B-cells(Nos)_source |
HLA-C_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.300e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD4+,T-cells(Nos)_source |
HLA-C_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.422e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD8+,T-cells(Nos)_source |
HLA-C_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
3.570e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Macrophages(Nos)_source |
HLA-C_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.740e-03 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Monocytes(Nos)_source |
HLA-C_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.831e-03 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| B-cells(Nos)_source |
HLA-E_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.633e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD4+,T-cells(Nos)_source |
HLA-E_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.814e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD8+,T-cells(Nos)_source |
HLA-E_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
4.303e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Macrophages(Nos)_source |
HLA-E_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.939e-03 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Monocytes(Nos)_source |
HLA-E_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
2.142e-03 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| B-cells(Nos)_source |
HLA-F_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
3.494e-03 |
0.03 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| CD8+,T-cells(Nos)_source |
HLA-F_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
1.840e-02 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Macrophages(Nos)_source |
HLA-F_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
6.558e-04 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |
| Monocytes(Nos)_source |
HLA-F_ligand |
CD8+,T-cells(Nos)_target |
CD8A_receptor |
9.558e-04 |
0.0 |
MHC-I |
Cell-Cell Contact |
KEGG: hsa04514 |