Sample overview

Project Name TCGA-HNSC
GSE ID GSE139324
GSM ID GSM4138111
Cell Line None
Tissue type tumor tissue
Disease Type Head and neck squamous cell carcinoma
PMID 31924475
Initial gene number 33694
Initial cell number 1298
Post-QC gene number 1662
Post-QC cell number 937

QC Metrics

Bulk-to-ScRNA-seq Label Transfer

Bulk phenotype-associated subpopulations

Reference-Based Annotation

Differentially expressed genes

Overall Survival : Cluster vs

Overall Survival : Cluster vs ( + )

Clinical Stage : Cluster vs

Tumor Size : Cluster vs

Lymph Node Involvement : Cluster vs

Distant Metastasis : Cluster vs

Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )

Cell Population Signaling and Communication

Ligand-Receptor-Mediated Cell-Cell Interactions