Sample overview
| Project Name |
TCGA-GBM
|
| GSE ID |
GSE237673
|
| GSM ID |
GSM7635632
|
| Cell Line |
None
|
| Tissue type |
None
|
| Disease Type |
GBM
|
| PMID |
39475570
|
| Initial gene number |
33538
|
| Initial cell number |
2895
|
| Post-QC gene number |
7160
|
| Post-QC cell number |
2433
|
Bulk-to-ScRNA-seq Label Transfer
Bulk phenotype-associated subpopulations
Reference-Based Annotation
Differentially expressed genes
Overall Survival : Cluster
vs
There are no results of the analysis here
Overall Survival : Cluster
vs ( + )
There are no results of the analysis here
Clinical Stage : Cluster
vs
There
are no results of the analysis here
Tumor Size : Cluster
vs
There
are no results of the analysis here
Lymph Node Involvement : Cluster
vs
There
are no results of the analysis here
Distant Metastasis : Cluster
vs
There
are no results of the analysis here
Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )
Cell Population Signaling and Communication
Ligand-Receptor-Mediated Cell-Cell Interactions
| Sending Cell Type |
Ligand |
Receiving Cell Type |
Receptor |
Score |
P-value |
Pathway Name |
Function |
Evidence |
| Neurons(Nos)_source |
NRG2_ligand |
Neurons(Nos)_target |
ERBB4_receptor |
4.985e-03 |
0.0 |
NRG |
Secreted Signaling |
KEGG: hsa04012 |
| Neurons(Nos)_source |
PDGFA_ligand |
Neurons(Nos)_target |
PDGFRA_receptor |
8.208e-05 |
0.02 |
PDGF |
Secreted Signaling |
PMID: 15207812 |
| Neurons(Poor)_source |
PDGFA_ligand |
Neurons(Nos)_target |
PDGFRA_receptor |
1.403e-05 |
0.0 |
PDGF |
Secreted Signaling |
PMID: 15207812 |
| Neurons(Nos)_source |
PDGFA_ligand |
Neurons(Poor)_target |
PDGFRA_receptor |
1.071e-05 |
0.01 |
PDGF |
Secreted Signaling |
PMID: 15207812 |
| Neurons(Poor)_source |
PDGFA_ligand |
Neurons(Poor)_target |
PDGFRA_receptor |
1.831e-06 |
0.0 |
PDGF |
Secreted Signaling |
PMID: 15207812 |
| Neurons(Poor)_source |
NAMPT_ligand |
Neurons(Good)_target |
INSR_receptor |
6.987e-05 |
0.0 |
VISFATIN |
Secreted Signaling |
PMID: 28490838 |
| Macrophages(Nos)_source |
NAMPT_ligand |
Neurons(Nos)_target |
INSR_receptor |
7.177e-05 |
0.0 |
VISFATIN |
Secreted Signaling |
PMID: 28490838 |
| Neurons(Nos)_source |
NAMPT_ligand |
Neurons(Nos)_target |
INSR_receptor |
2.496e-03 |
0.0 |
VISFATIN |
Secreted Signaling |
PMID: 28490838 |
| Neurons(Poor)_source |
NAMPT_ligand |
Neurons(Nos)_target |
INSR_receptor |
8.321e-04 |
0.0 |
VISFATIN |
Secreted Signaling |
PMID: 28490838 |
| Neurons(Poor)_source |
NAMPT_ligand |
Neurons(Poor)_target |
INSR_receptor |
4.723e-05 |
0.0 |
VISFATIN |
Secreted Signaling |
PMID: 28490838 |
| Neurons(Nos)_source |
PTN_ligand |
Neurons(Nos)_target |
PTPRZ1_receptor |
1.461e-01 |
0.0 |
PTN |
Secreted Signaling |
PMID: 28356350; PMID: 25620911 |
| Neurons(Poor)_source |
PTN_ligand |
Neurons(Nos)_target |
PTPRZ1_receptor |
1.708e-02 |
0.0 |
PTN |
Secreted Signaling |
PMID: 28356350; PMID: 25620911 |
| Neurons(Nos)_source |
PTN_ligand |
Neurons(Poor)_target |
SDC3_receptor |
1.764e-03 |
0.01 |
PTN |
Secreted Signaling |
PMID: 28356350; PMID: 25620911 |
| Neurons(Poor)_source |
PTN_ligand |
Neurons(Poor)_target |
SDC3_receptor |
2.087e-04 |
0.0 |
PTN |
Secreted Signaling |
PMID: 28356350; PMID: 25620911 |
| Neurons(Good)_source |
PTN_ligand |
Neurons(Nos)_target |
NCL_receptor |
4.857e-04 |
0.02 |
PTN |
Secreted Signaling |
PMID: 28356350; PMID: 25620911 |
| Neurons(Nos)_source |
PTN_ligand |
Neurons(Nos)_target |
NCL_receptor |
3.899e-03 |
0.0 |
PTN |
Secreted Signaling |
PMID: 28356350; PMID: 25620911 |
| Neurons(Poor)_source |
PTN_ligand |
Neurons(Nos)_target |
NCL_receptor |
4.618e-04 |
0.0 |
PTN |
Secreted Signaling |
PMID: 28356350; PMID: 25620911 |
| Neurons(Nos)_source |
PTN_ligand |
Neurons(Nos)_target |
ALK_receptor |
8.500e-03 |
0.01 |
PTN |
Secreted Signaling |
PMID: 28356350; PMID: 25620911 |
| Neurons(Poor)_source |
PTN_ligand |
Neurons(Nos)_target |
ALK_receptor |
1.006e-03 |
0.01 |
PTN |
Secreted Signaling |
PMID: 28356350; PMID: 25620911 |
| Macrophages(Nos)_source |
PSAP_ligand |
Neurons(Nos)_target |
GPR37L1_receptor |
8.680e-05 |
0.0 |
PSAP |
Secreted Signaling |
PMID: 23690594 |
| Neurons(Poor)_source |
PSAP_ligand |
Neurons(Nos)_target |
GPR37L1_receptor |
9.766e-05 |
0.0 |
PSAP |
Secreted Signaling |
PMID: 23690594 |
| Macrophages(Nos)_source |
PSAP_ligand |
Neurons(Poor)_target |
GPR37L1_receptor |
1.614e-05 |
0.0 |
PSAP |
Secreted Signaling |
PMID: 23690594 |
| Neurons(Poor)_source |
PSAP_ligand |
Neurons(Poor)_target |
GPR37L1_receptor |
1.824e-05 |
0.0 |
PSAP |
Secreted Signaling |
PMID: 23690594 |
| Neurons(Poor)_source |
COL4A1_ligand |
Macrophages(Nos)_target |
ITGA2_ITGB1_receptor |
1.233e-06 |
0.03 |
COLLAGEN |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
COL4A1_ligand |
Neurons(Nos)_target |
ITGA2_ITGB1_receptor |
5.133e-05 |
0.0 |
COLLAGEN |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Nos)_source |
COL4A2_ligand |
Neurons(Nos)_target |
ITGA2_ITGB1_receptor |
5.562e-04 |
0.03 |
COLLAGEN |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMA2_ligand |
Macrophages(Nos)_target |
ITGA2_ITGB1_receptor |
8.742e-06 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMA2_ligand |
Neurons(Nos)_target |
ITGA2_ITGB1_receptor |
3.647e-04 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMA2_ligand |
Neurons(Poor)_target |
ITGA2_ITGB1_receptor |
3.937e-05 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMC1_ligand |
Neurons(Nos)_target |
ITGA2_ITGB1_receptor |
1.068e-04 |
0.02 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMA2_ligand |
Macrophages(Nos)_target |
ITGA7_ITGB1_receptor |
6.745e-06 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMA2_ligand |
Neurons(Nos)_target |
ITGA7_ITGB1_receptor |
4.658e-04 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMA2_ligand |
Neurons(Poor)_target |
ITGA7_ITGB1_receptor |
5.078e-05 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Nos)_source |
LAMA4_ligand |
Neurons(Nos)_target |
ITGA7_ITGB1_receptor |
1.332e-03 |
0.01 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Nos)_source |
LAMC1_ligand |
Neurons(Nos)_target |
ITGA7_ITGB1_receptor |
1.095e-03 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMC1_ligand |
Neurons(Nos)_target |
ITGA7_ITGB1_receptor |
1.365e-04 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMA2_ligand |
Neurons(Good)_target |
ITGAV_ITGB8_receptor |
3.310e-04 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMA2_ligand |
Neurons(Nos)_target |
ITGAV_ITGB8_receptor |
2.797e-03 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMA2_ligand |
Neurons(Poor)_target |
ITGAV_ITGB8_receptor |
3.315e-04 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Nos)_source |
LAMA4_ligand |
Neurons(Poor)_target |
ITGAV_ITGB8_receptor |
9.720e-04 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMC1_ligand |
Neurons(Nos)_target |
ITGAV_ITGB8_receptor |
8.397e-04 |
0.03 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Nos)_source |
LAMC1_ligand |
Neurons(Poor)_target |
ITGAV_ITGB8_receptor |
8.005e-04 |
0.0 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
LAMC1_ligand |
Neurons(Poor)_target |
ITGAV_ITGB8_receptor |
9.968e-05 |
0.01 |
LAMININ |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
COL4A1_ligand |
Neurons(Nos)_target |
ITGAV_ITGB8_receptor |
4.059e-04 |
0.0 |
COLLAGEN |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Nos)_source |
COL4A1_ligand |
Neurons(Poor)_target |
ITGAV_ITGB8_receptor |
3.412e-04 |
0.0 |
COLLAGEN |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Poor)_source |
COL4A1_ligand |
Neurons(Poor)_target |
ITGAV_ITGB8_receptor |
4.820e-05 |
0.0 |
COLLAGEN |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Nos)_source |
COL4A2_ligand |
Neurons(Nos)_target |
ITGAV_ITGB8_receptor |
4.394e-03 |
0.0 |
COLLAGEN |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Nos)_source |
COL4A2_ligand |
Neurons(Poor)_target |
ITGAV_ITGB8_receptor |
5.217e-04 |
0.0 |
COLLAGEN |
ECM-Receptor |
KEGG: hsa04512 |
| Neurons(Nos)_source |
CADM1_ligand |
Neurons(Nos)_target |
CADM1_receptor |
4.886e-02 |
0.0 |
CADM |
Cell-Cell Contact |
PMID: 24503895 |
| Neurons(Poor)_source |
CDH2_ligand |
Neurons(Nos)_target |
CDH2_receptor |
1.377e-03 |
0.02 |
CDH |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
CDH2_ligand |
Neurons(Poor)_target |
CDH2_receptor |
1.377e-03 |
0.02 |
CDH |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Poor)_source |
CDH2_ligand |
Neurons(Poor)_target |
CDH2_receptor |
1.715e-04 |
0.03 |
CDH |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
CNTN1_ligand |
Neurons(Nos)_target |
NRCAM_receptor |
9.015e-02 |
0.0 |
CNTN |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Good)_source |
CNTN1_ligand |
Neurons(Poor)_target |
NRCAM_receptor |
1.359e-03 |
0.02 |
CNTN |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
CNTN1_ligand |
Neurons(Poor)_target |
NRCAM_receptor |
1.129e-02 |
0.0 |
CNTN |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
EFNB2_ligand |
Neurons(Good)_target |
EPHB1_receptor |
7.154e-05 |
0.0 |
EPHB |
Cell-Cell Contact |
PMID: 15114347 |
| Neurons(Nos)_source |
EFNB2_ligand |
Neurons(Nos)_target |
EPHB1_receptor |
3.973e-04 |
0.0 |
EPHB |
Cell-Cell Contact |
PMID: 15114347 |
| Neurons(Good)_source |
EFNB2_ligand |
Macrophages(Nos)_target |
EPHB2_receptor |
7.740e-07 |
0.01 |
EPHB |
Cell-Cell Contact |
PMID: 15114347 |
| Neurons(Nos)_source |
EFNB2_ligand |
Macrophages(Nos)_target |
EPHB2_receptor |
5.954e-06 |
0.0 |
EPHB |
Cell-Cell Contact |
PMID: 15114347 |
| Neurons(Poor)_source |
EFNB2_ligand |
Macrophages(Nos)_target |
EPHB2_receptor |
5.965e-07 |
0.02 |
EPHB |
Cell-Cell Contact |
PMID: 15114347 |
| Neurons(Nos)_source |
EFNB2_ligand |
Neurons(Good)_target |
EPHB2_receptor |
9.664e-06 |
0.03 |
EPHB |
Cell-Cell Contact |
PMID: 15114347 |
| Neurons(Nos)_source |
EFNB2_ligand |
Neurons(Nos)_target |
EPHB2_receptor |
6.035e-05 |
0.02 |
EPHB |
Cell-Cell Contact |
PMID: 15114347 |
| Neurons(Good)_source |
JAM3_ligand |
Neurons(Good)_target |
JAM3_receptor |
5.763e-04 |
0.0 |
JAM |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
JAM3_ligand |
Neurons(Good)_target |
JAM3_receptor |
3.683e-03 |
0.0 |
JAM |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Good)_source |
JAM3_ligand |
Neurons(Nos)_target |
JAM3_receptor |
3.683e-03 |
0.0 |
JAM |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
NCAM1_ligand |
Neurons(Good)_target |
NCAM1_receptor |
1.762e-02 |
0.01 |
NCAM |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Good)_source |
NCAM1_ligand |
Neurons(Nos)_target |
NCAM1_receptor |
1.762e-02 |
0.01 |
NCAM |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
NCAM1_ligand |
Neurons(Nos)_target |
NCAM1_receptor |
1.329e-01 |
0.0 |
NCAM |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Good)_source |
NCAM1_ligand |
Neurons(Nos)_target |
NCAM2_receptor |
1.824e-02 |
0.0 |
NCAM |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
NCAM1_ligand |
Neurons(Nos)_target |
NCAM2_receptor |
1.377e-01 |
0.0 |
NCAM |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
NEGR1_ligand |
Neurons(Nos)_target |
NEGR1_receptor |
2.495e-02 |
0.0 |
NEGR |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
LRRC4C_ligand |
Neurons(Nos)_target |
NTNG1_receptor |
6.786e-02 |
0.0 |
NGL |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
NRXN1_ligand |
Neurons(Nos)_target |
NLGN1_receptor |
2.285e-01 |
0.0 |
NRXN |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Good)_source |
NRXN2_ligand |
Neurons(Nos)_target |
NLGN1_receptor |
3.707e-03 |
0.01 |
NRXN |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Nos)_source |
NRXN2_ligand |
Neurons(Nos)_target |
NLGN1_receptor |
2.548e-02 |
0.03 |
NRXN |
Cell-Cell Contact |
KEGG: hsa04514 |
| Neurons(Good)_source |
SEMA5A_ligand |
Neurons(Good)_target |
PLXNA3_receptor |
1.265e-04 |
0.0 |
SEMA5 |
Cell-Cell Contact |
PMID: 27533782 |
| Neurons(Nos)_source |
SEMA5A_ligand |
Neurons(Good)_target |
PLXNA3_receptor |
9.745e-04 |
0.0 |
SEMA5 |
Cell-Cell Contact |
PMID: 27533782 |