Sample overview

Project Name TCGA-BRCA
GSE ID GSE186344
GSM ID GSM5645892
Cell Line None
Tissue type Brain
Disease Type Breast Cancer Brain Metastasis
PMID 35063085
Initial gene number 33694
Initial cell number 12003
Post-QC gene number 10155
Post-QC cell number 7741

QC Metrics

Bulk-to-ScRNA-seq Label Transfer

Bulk phenotype-associated subpopulations

Reference-Based Annotation

Differentially expressed genes

Overall Survival : Cluster vs

Overall Survival : Cluster vs ( + )

Clinical Stage : Cluster vs

Tumor Size : Cluster vs

Lymph Node Involvement : Cluster vs

Distant Metastasis : Cluster vs

Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )

Cell Population Signaling and Communication

Ligand-Receptor-Mediated Cell-Cell Interactions