Sample overview

Project Name TCGA-BRCA
GSE ID GSE182694
GSM ID GSM5534781
Cell Line SUM190
Tissue type None
Disease Type HER2-positive Breast Cancer
PMID \
Initial gene number 33538
Initial cell number 1445
Post-QC gene number 4878
Post-QC cell number 1344

QC Metrics

Bulk-to-ScRNA-seq Label Transfer

Bulk phenotype-associated subpopulations

Reference-Based Annotation

Differentially expressed genes

Overall Survival : Cluster vs

Overall Survival : Cluster vs ( + )

Clinical Stage : Cluster vs

Tumor Size : Cluster vs

Lymph Node Involvement : Cluster vs

Distant Metastasis : Cluster vs

Cell-Cell communications ( Survival-Associated Subpopulations Across Cell Types )

Cell Population Signaling and Communication

Ligand-Receptor-Mediated Cell-Cell Interactions